mcp-integration
The mcp-integration skill provides comprehensive guidance for integrating Model Context Protocol servers into Claude Code plugins to connect external services and APIs. Use it when users request MCP setup, server configuration, authentication flows, or tool bundling through .mcp.json or plugin.json, covering stdio, SSE, HTTP, and WebSocket server types.
git clone --depth 1 https://github.com/Galaxy-Dawn/claude-scholar /tmp/mcp-integration && cp -r /tmp/mcp-integration/skills/mcp-integration ~/.claude/skills/mcp-integrationSKILL.md
# MCP Integration for Claude Code Plugins
## Overview
Model Context Protocol (MCP) enables Claude Code plugins to integrate with external services and APIs by providing structured tool access. Use MCP integration to expose external service capabilities as tools within Claude Code.
**Key capabilities:**
- Connect to external services (databases, APIs, file systems)
- Provide 10+ related tools from a single service
- Handle OAuth and complex authentication flows
- Bundle MCP servers with plugins for automatic setup
## MCP Server Configuration Methods
Plugins can bundle MCP servers in two ways:
### Method 1: Dedicated .mcp.json (Recommended)
Create `.mcp.json` at plugin root:
```json
{
"database-tools": {
"command": "${CLAUDE_PLUGIN_ROOT}/servers/db-server",
"args": ["--config", "${CLAUDE_PLUGIN_ROOT}/config.json"],
"env": {
"DB_URL": "${DB_URL}"
}
}
}
```
**Benefits:**
- Clear separation of concerns
- Easier to maintain
- Better for multiple servers
### Method 2: Inline in plugin.json
Add `mcpServers` field to plugin.json:
```json
{
"name": "my-plugin",
"version": "1.0.0",
"mcpServers": {
"plugin-api": {
"command": "${CLAUDE_PLUGIN_ROOT}/servers/api-server",
"args": ["--port", "8080"]
}
}
}
```
**Benefits:**
- Single configuration file
- Good for simple single-server plugins
## MCP Server Types
### stdio (Local Process)
Execute local MCP servers as child processes. Best for local tools and custom servers.
**Configuration:**
```json
{
"filesystem": {
"command": "npx",
"args": ["-y", "@modelcontextprotocol/server-filesystem", "/allowed/path"],
"env": {
"LOG_LEVEL": "debug"
}
}
}
```
**Use cases:**
- File system access
- Local database connections
- Custom MCP servers
- NPM-packaged MCP servers
**Process management:**
- Claude Code spawns and manages the process
- Communicates via stdin/stdout
- Terminates when Claude Code exits
### SSE (Server-Sent Events)
Connect to hosted MCP servers with OAuth support. Best for cloud services.
**Configuration:**
```json
{
"asana": {
"type": "sse",
"url": "https://mcp.asana.com/sse"
}
}
```
**Use cases:**
- Official hosted MCP servers (Asana, GitHub, etc.)
- Cloud services with MCP endpoints
- OAuth-based authentication
- No local installation needed
**Authentication:**
- OAuth flows handled automatically
- User prompted on first use
- Tokens managed by Claude Code
### HTTP (REST API)
Connect to RESTful MCP servers with token authentication.
**Configuration:**
```json
{
"api-service": {
"type": "http",
"url": "https://api.example.com/mcp",
"headers": {
"Authorization": "Bearer ${API_TOKEN}",
"X-Custom-Header": "value"
}
}
}
```
**Use cases:**
- REST API-based MCP servers
- Token-based authentication
- Custom API backends
- Stateless interactions
### WebSocket (Real-time)
Connect to WebSocket MCP servers for real-time bidirectional communication.
**Configuration:**
```json
{
"realtime-service": {
"type": "ws",
"url": "wss://mcp.example.com/ws",
"headers": {
"Authorization": "Bearer ${TOKEN}"
}
}
}
```
**Use cases:**
- Real-time data streaming
- Persistent connections
- Push notifications from server
- Low-latency requirements
## Environment Variable Expansion
All MCP configurations support environment variable substitution:
**${CLAUDE_PLUGIN_ROOT}** - Plugin directory (always use for portability):
```json
{
"command": "${CLAUDE_PLUGIN_ROOT}/servers/my-server"
}
```
**User environment variables** - From user's shell:
```json
{
"env": {
"API_KEY": "${MY_API_KEY}",
"DATABASE_URL": "${DB_URL}"
}
}
```
**Best practice:** Document all required environment variables in plugin README.
## MCP Tool Naming
When MCP servers provide tools, they're automatically prefixed:
**Format:** `mcp__plugin_<plugin-name>_<server-name>__<tool-name>`
**Example:**
- Plugin: `asana`
- Server: `asana`
- Tool: `create_task`
- **Full name:** `mcp__plugin_asana_asana__asana_create_task`
### Using MCP Tools in Commands
Pre-allow specific MCP tools in command frontmatter:
```markdown
---
allowed-tools: [
"mcp__plugin_asana_asana__asana_create_task",
"mcp__plugin_asana_asana__asana_search_tasks"
]
---
```
**Wildcard (use sparingly):**
```markdown
---
allowed-tools: ["mcp__plugin_asana_asana__*"]
---
```
**Best practice:** Pre-allow specific tools, not wildcards, for security.
## Lifecycle Management
**Automatic startup:**
- MCP servers start when plugin enables
- Connection established before first tool use
- Restart required for configuration changes
**Lifecycle:**
1. Plugin loads
2. MCP configuration parsed
3. Server process started (stdio) or connection established (SSE/HTTP/WS)
4. Tools discovered and registered
5. Tools available as `mcp__plugin_...__...`
**Viewing servers:**
Use `/mcp` command to see all servers including plugin-provided ones.
## Authentication Patterns
### OAuth (SSE/HTTP)
OAuth handled automatically by Claude Code:
```json
{
"type": "sse",
"url": "https://mcp.example.com/sse"
}
```
User authenticates in browser on first use. No additional configuration needed.
### Token-Based (Headers)
Static or environment variable tokens:
```json
{
"type": "http",
"url": "https://api.example.com",
"headers": {
"Authorization": "Bearer ${API_TOKEN}"
}
}
```
Document required environment variables in README.
### Environment Variables (stdio)
Pass configuration to MCP server:
```json
{
"command": "python",
"args": ["-m", "my_mcp_server"],
"env": {
"DATABASE_URL": "${DB_URL}",
"API_KEY": "${API_KEY}",
"LOG_LEVEL": "info"
}
}
```
## Integration Patterns
### Pattern 1: Simple Tool Wrapper
Commands use MCP tools with user interaction:
```markdown
# Command: create-item.md
---
allowed-tools: ["mcp__plugin_name_server__create_item"]
---
Steps:
1. Gather item details from user
2. Use mcp__plugin_name_server__create_item
3. CoExpert code review specialist. Proactively reviews code for quality, security, and maintainability. Use immediately after writing or modifying code. MUST BE USED for all code changes.
Use this agent when the user provides a Kaggle competition URL or asks to learn from Kaggle winning solutions. Examples:
Use this agent when the user asks to "conduct literature review", "search for papers", "analyze research papers", "identify research gaps", "review related work", or mentions starting a research project. This agent integrates with Zotero for automated paper collection, organization, and full-text analysis. Examples:
Use this agent when the user provides a research paper (PDF/DOCX/arXiv link) or asks to learn writing patterns from papers, extract venue-specific writing signals, study paper structure, or mine rebuttal strategies. The agent writes extracted knowledge into the active installed paper-miner writing memory for ml-paper-writing. It does not maintain project-specific writing memory.
Use this agent when the user asks to "write rebuttal", "respond to reviewers", "analyze review comments", or needs help with academic paper review response. This agent specializes in systematic rebuttal writing with professional tone and structured responses.
Test-driven development guide for writing tests first, implementing the smallest passing change, and keeping verification tight. Use when the user explicitly wants TDD or when a task should be driven by failing tests before code.
Run a blocker-first post-experiment workflow: validate evidence, produce strict statistical analysis when possible, and generate a decision-oriented results report only when the analysis bundle is sufficient. Uses results-analysis + results-report as a gated two-stage workflow.
Commit changes following Conventional Commits format (local only, no push).