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optimizing-attention-flash

This Claude Code skill implements Flash Attention, an IO-aware algorithm that accelerates transformer attention computation while reducing memory usage. Use it when training or running transformer models with long sequences exceeding 512 tokens, experiencing GPU memory constraints during attention operations, or requiring faster inference speeds. The skill provides multiple implementation options including PyTorch native scaled dot product attention and the dedicated flash-attn library, supporting various hardware configurations and attention patterns like causal masking.

Install in Claude Code
Copy
git clone --depth 1 https://github.com/Orchestra-Research/AI-Research-SKILLs /tmp/optimizing-attention-flash && cp -r /tmp/optimizing-attention-flash/10-optimization/flash-attention ~/.claude/skills/optimizing-attention-flash
Then start a new Claude Code session; the skill loads automatically.

SKILL.md

# Flash Attention - Fast Memory-Efficient Attention

## Quick start

Flash Attention provides 2-4x speedup and 10-20x memory reduction for transformer attention through IO-aware tiling and recomputation.

**PyTorch native (easiest, PyTorch 2.2+)**:
```python
import torch
import torch.nn.functional as F

q = torch.randn(2, 8, 512, 64, device='cuda', dtype=torch.float16)  # [batch, heads, seq, dim]
k = torch.randn(2, 8, 512, 64, device='cuda', dtype=torch.float16)
v = torch.randn(2, 8, 512, 64, device='cuda', dtype=torch.float16)

# Automatically uses Flash Attention if available
out = F.scaled_dot_product_attention(q, k, v)
```

**flash-attn library (more features)**:
```bash
pip install flash-attn --no-build-isolation
```

```python
from flash_attn import flash_attn_func

# q, k, v: [batch, seqlen, nheads, headdim]
out = flash_attn_func(q, k, v, dropout_p=0.0, causal=True)
```

## Common workflows

### Workflow 1: Enable in existing PyTorch model

Copy this checklist:

```
Flash Attention Integration:
- [ ] Step 1: Check PyTorch version (≥2.2)
- [ ] Step 2: Enable Flash Attention backend
- [ ] Step 3: Verify speedup with profiling
- [ ] Step 4: Test accuracy matches baseline
```

**Step 1: Check PyTorch version**

```bash
python -c "import torch; print(torch.__version__)"
# Should be ≥2.2.0
```

If <2.2, upgrade:
```bash
pip install --upgrade torch
```

**Step 2: Enable Flash Attention backend**

Replace standard attention:
```python
# Before (standard attention)
attn_weights = torch.softmax(q @ k.transpose(-2, -1) / math.sqrt(d_k), dim=-1)
out = attn_weights @ v

# After (Flash Attention)
import torch.nn.functional as F
out = F.scaled_dot_product_attention(q, k, v, attn_mask=mask)
```

Force Flash Attention backend:
```python
with torch.backends.cuda.sdp_kernel(
    enable_flash=True,
    enable_math=False,
    enable_mem_efficient=False
):
    out = F.scaled_dot_product_attention(q, k, v)
```

**Step 3: Verify speedup with profiling**

```python
import torch.utils.benchmark as benchmark

def test_attention(use_flash):
    q, k, v = [torch.randn(2, 8, 2048, 64, device='cuda', dtype=torch.float16) for _ in range(3)]

    if use_flash:
        with torch.backends.cuda.sdp_kernel(enable_flash=True):
            return F.scaled_dot_product_attention(q, k, v)
    else:
        attn = (q @ k.transpose(-2, -1) / 8.0).softmax(dim=-1)
        return attn @ v

# Benchmark
t_flash = benchmark.Timer(stmt='test_attention(True)', globals=globals())
t_standard = benchmark.Timer(stmt='test_attention(False)', globals=globals())

print(f"Flash: {t_flash.timeit(100).mean:.3f}s")
print(f"Standard: {t_standard.timeit(100).mean:.3f}s")
```

Expected: 2-4x speedup for sequences >512 tokens.

**Step 4: Test accuracy matches baseline**

```python
# Compare outputs
q, k, v = [torch.randn(1, 8, 512, 64, device='cuda', dtype=torch.float16) for _ in range(3)]

# Flash Attention
out_flash = F.scaled_dot_product_attention(q, k, v)

# Standard attention
attn_weights = torch.softmax(q @ k.transpose(-2, -1) / 8.0, dim=-1)
out_standard = attn_weights @ v

# Check difference
diff = (out_flash - out_standard).abs().max()
print(f"Max difference: {diff:.6f}")
# Should be <1e-3 for float16
```

### Workflow 2: Use flash-attn library for advanced features

For multi-query attention, sliding window, or H100 FP8.

Copy this checklist:

```
flash-attn Library Setup:
- [ ] Step 1: Install flash-attn library
- [ ] Step 2: Modify attention code
- [ ] Step 3: Enable advanced features
- [ ] Step 4: Benchmark performance
```

**Step 1: Install flash-attn library**

```bash
# NVIDIA GPUs (CUDA 12.0+)
pip install flash-attn --no-build-isolation

# Verify installation
python -c "from flash_attn import flash_attn_func; print('Success')"
```

**Step 2: Modify attention code**

```python
from flash_attn import flash_attn_func

# Input: [batch_size, seq_len, num_heads, head_dim]
# Transpose from [batch, heads, seq, dim] if needed
q = q.transpose(1, 2)  # [batch, seq, heads, dim]
k = k.transpose(1, 2)
v = v.transpose(1, 2)

out = flash_attn_func(
    q, k, v,
    dropout_p=0.1,
    causal=True,  # For autoregressive models
    window_size=(-1, -1),  # No sliding window
    softmax_scale=None  # Auto-scale
)

out = out.transpose(1, 2)  # Back to [batch, heads, seq, dim]
```

**Step 3: Enable advanced features**

Multi-query attention (shared K/V across heads):
```python
from flash_attn import flash_attn_func

# q: [batch, seq, num_q_heads, dim]
# k, v: [batch, seq, num_kv_heads, dim]  # Fewer KV heads
out = flash_attn_func(q, k, v)  # Automatically handles MQA
```

Sliding window attention (local attention):
```python
# Only attend to window of 256 tokens before/after
out = flash_attn_func(
    q, k, v,
    window_size=(256, 256),  # (left, right) window
    causal=True
)
```

**Step 4: Benchmark performance**

```python
import torch
from flash_attn import flash_attn_func
import time

q, k, v = [torch.randn(4, 4096, 32, 64, device='cuda', dtype=torch.float16) for _ in range(3)]

# Warmup
for _ in range(10):
    _ = flash_attn_func(q, k, v)

# Benchmark
torch.cuda.synchronize()
start = time.time()
for _ in range(100):
    out = flash_attn_func(q, k, v)
    torch.cuda.synchronize()
end = time.time()

print(f"Time per iteration: {(end-start)/100*1000:.2f}ms")
print(f"Memory allocated: {torch.cuda.max_memory_allocated()/1e9:.2f}GB")
```

### Workflow 3: H100 FP8 optimization (FlashAttention-3)

For maximum performance on H100 GPUs.

```
FP8 Setup:
- [ ] Step 1: Verify H100 GPU available
- [ ] Step 2: Install flash-attn with FP8 support
- [ ] Step 3: Convert inputs to FP8
- [ ] Step 4: Run with FP8 attention
```

**Step 1: Verify H100 GPU**

```bash
nvidia-smi --query-gpu=name --format=csv
# Should show "H100" or "H800"
```

**Step 2: Install flash-attn with FP8 support**

```bash
pip install flash-attn --no-build-isolation
# FP8 support included for H100
```

**Step 3: Convert inputs to FP8**

```python
import torch

q = torch.randn(2, 4096, 32, 6
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