init-deep

## Codex Harness Tool Compatibility

This skill may include examples copied from the OpenCode harness. In Codex, do not call OpenCode-only tools such as `call_omo_agent(...)`, `task(...)`, `background_output(...)`, or `team_*(...)` literally. Translate those examples to Codex native tools:

| OpenCode example | Codex tool to use |
| --- | --- |
| `call_omo_agent(subagent_type="explore", ...)` | `multi_agent_v1.spawn_agent({"message":"TASK: act as an explorer. ...","agent_type":"explorer","fork_context":false})` |
| `call_omo_agent(subagent_type="librarian", ...)` | `multi_agent_v1.spawn_agent({"message":"TASK: act as a librarian. ...","agent_type":"librarian","fork_context":false})` |
| `task(subagent_type="plan", ...)` | `multi_agent_v1.spawn_agent({"message":"TASK: act as a planning agent. ...","agent_type":"plan","fork_context":false})` |
| `task(subagent_type="oracle", ...)` for final verification | `multi_agent_v1.spawn_agent({"message":"TASK: act as a rigorous reviewer. ...","agent_type":"lazycodex-gate-reviewer","fork_context":false})` |
| `task(category="...", ...)` for implementation or QA | `multi_agent_v1.spawn_agent({"message":"TASK: act as an implementation or QA worker. ...","fork_context":false})` |
| `background_output(task_id="...")` | `multi_agent_v1.wait_agent(...)` for mailbox signals |
| `team_*(...)` | Use Codex native subagents via `multi_agent_v1.spawn_agent`, `multi_agent_v1.send_input`, `multi_agent_v1.wait_agent`, and `multi_agent_v1.close_agent` |

Role-specific behavior must be described in a self-contained `message`. Use `fork_context: false` to start the child with only the initial prompt (no parent history); use `fork_context: true` only when full parent history is truly required. Include any required conversation context, files, diffs, constraints, and requested skill names directly in the spawned agent's `message`. OMO installs these selectable agent roles into `~/.codex/agents/`: `explorer`, `librarian`, `plan`, `momus`, `metis`, `lazycodex-code-reviewer`, `lazycodex-qa-executor`, and `lazycodex-gate-reviewer` - pass the matching name as `agent_type` so the child gets that role's model and instructions. If the spawn tool exposes no `agent_type` parameter, omit it and describe the role inside `message`. If a code block below conflicts with this section, this section wins.

For work likely to exceed one wait cycle, require the child to send `WORKING: <task> - <current phase>` before long passes and `BLOCKED: <reason>` only when progress stops. A `multi_agent_v1.wait_agent` timeout only means no new mailbox update arrived. Treat a running child as alive. Fallback only when the child is completed without the deliverable, ack-only after followup, explicitly `BLOCKED:`, or no longer running.

# /init-deep

Generate hierarchical AGENTS.md files. Root + complexity-scored subdirectories.

## Usage

```
/init-deep                      # Update mode: modify existing + create new where warranted
/init-deep --create-new         # Read existing → remove all → regenerate from scratch
/init-deep --max-depth=2        # Limit directory depth (default: 3)
```

---

## Workflow (High-Level)

1. **Discovery + Analysis** (concurrent)
   - Fire background explore agents immediately
   - Main session: bash structure + LSP/codegraph code map + read existing AGENTS.md
2. **Score & Decide** - Determine AGENTS.md locations from merged findings
3. **Generate** - Root first, then subdirs in parallel
4. **Review** - Deduplicate, trim, validate

<critical>
**TodoWrite ALL phases. Mark in_progress → completed in real-time.**
```
TodoWrite([
  { id: "discovery", content: "Fire explore agents + LSP/codegraph map + read existing", status: "pending", priority: "high" },
  { id: "scoring", content: "Score directories, determine locations", status: "pending", priority: "high" },
  { id: "generate", content: "Generate AGENTS.md files (root + subdirs)", status: "pending", priority: "high" },
  { id: "review", content: "Deduplicate, validate, trim", status: "pending", priority: "medium" }
])
```
</critical>

---

## Phase 1: Discovery + Analysis (Concurrent)

**Mark "discovery" as in_progress.**

### Fire Background Explore Agents IMMEDIATELY

Don't wait-these run async while main session works. **Equip every agent with the code graph**: any task touching structure, entry points, dependencies, or hotspots MUST query `codegraph_*` (explore/search/callers/callees/impact) and `lsp_symbols` when present, and ground its claims in that data instead of guessing from conventions. Richer real-graph context per agent = a more accurate project map.

```
// Fire all at once, collect results later
task(subagent_type="explore", load_skills=[], description="Explore project structure", run_in_background=true, prompt="Project structure: map real layout via codegraph_explore/codegraph_files → REPORT deviations from standard patterns")
task(subagent_type="explore", load_skills=[], description="Find entry points", run_in_background=true, prompt="Entry points: FIND main files, trace reach via codegraph_callees + lsp_symbols → REPORT non-standard organization")
task(subagent_type="explore", load_skills=[], description="Find conventions", run_in_background=true, prompt="Conventions: FIND config files (.eslintrc, pyproject.toml, .editorconfig) → REPORT project-specific rules")
task(subagent_type="explore", load_skills=[], description="Find anti-patterns", run_in_background=true, prompt="Anti-patterns: FIND 'DO NOT', 'NEVER', 'ALWAYS', 'DEPRECATED' comments → LIST forbidden patterns")
task(subagent_type="explore", load_skills=[], description="Explore build/CI", run_in_background=true, prompt="Build/CI: FIND .github/workflows, Makefile → REPORT non-standard patterns")
task(subagent_type="explore", load_skills=[], description="Find test patterns", run_in_background=true, prompt="Test patterns: FIND test configs/structure; codegraph_callers on core modules to see what is covered → REPORT unique conventions")
```

<dynamic